miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|39877057|gb|CK294046.1|CK294046 GATATTTCAATTTTCTTTCTTCATCCATATATAAATATTTTGAAGAAATAAAGATGGGTTATTGGCAAGCCAAGGTTGTT
CCAAAATTAAAGCAGATCTTTGACAAAAATGGACCGAAGAAGGCTGCTGCTGCTGAGGCATGGAAAACCTTTGACGAGGC
TAAGGAGCAATACAGCAAAGAGTTCGACGAGAAGAAAACTGAGCTCCAACCTAAAGTTGTTGAAATTTATGAAGCTGCTG
CAGTTGAGATCAAGACTTTGGTGAAGGGACCAAAGGTTTCAGGATTGAAGAAACACTCAACTGAAGTCCAGAAATTCCTT
GATGAGCTTGTCAAGATTGAATTTCCGGGATCAAAAGTAGTAAGTGAAGCAAGTTCAAACTTTGGTCCTTCCTATGTATC
TGGTCCGGTTCTTTTTGTGTTCGAGAAAGTTTCCACTTTAATCGTCACAGAAGACAAGAAAGAAGAAGAGGCGGCGATCC
CAGTAGCCGCCGCCTCTGAAGCAGAAGCAACAACAACTGCTCCTGTTGAGGTGAAGGAGAAAGAGATAGTTGTTGAAGCA
GAAGCAAAGAAAGAGGAAGAACCAGCACCAGCACCAGCACCAGCACCTGCACCTGCACCTGCACCTGCACCTGCACCTGC
ACCTGCGGCGGCACCTGCAGCTGAGGTGGCACCTGCTGAGGTAGCACCTGCAGCTGACGTGGCACCTGCCAAGGTGGAAG
AAGCACCTGCAGCAGTAGCAGCACCAGAACCACCAAAAGCTTGATGAATCTTTCAATTTGTTTGTCTCTCTGTGTAAGAG
TTGATTTTTTATTTTATTTTTCTTTGTCTGTTGATTTTTCTGTGTTTTGTGGTCACTGTATAAGAAAGAAGACAAAAACA
TGATTTTGTATATTTTTTGTTTGTGTTTTTCTCCCTTCTCTCTTTCTCGTGTTAGTTTGTACTTTGTACAATATTCTATG
TACAT




Most similar to sp|Q0JPA6|SRS1_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q0JPA6|SRS1_ORYSJ Salt stress root protein RS1 OS=Oryza sativa
           subsp. japonica GN=Os01g0233000 PE=2 SV=1
          Length = 204

 Score =  116 bits (290), Expect = 3e-25
 Identities = 64/132 (48%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
 Frame = +3

Query: 63  WQAKVVPKLKQIFDKNGPKKAAAAEAWKTFDEAKEQYSKEFDEKKTELQPKVVEIYEAAA 242
           W+ KV+  L ++FDK+G KKAAAAE  K+F+  KE+  KE D+KKTEL+PKVVE+ E++ 
Sbjct: 5   WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFN--KEEIGKEIDDKKTELEPKVVEVVESSP 61

Query: 243 VEIKTLVKGPKV-SGLKKHSTEVQKFLDELVKIEFPGSKVVSEASSNFGPSYVSGPVLFV 419
            EIK L+K  K  S +KK+   V KFL+EL KI+FPG+K VS+A +  G + +S  + F+
Sbjct: 62  PEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFI 121

Query: 420 FEKVSTLIVTED 455
            EKV+  +  E+
Sbjct: 122 LEKVAPFVPKEE 133